Website Site Map
A comprehensive overview of all pages and documentation available on Job Dispatcher, designed to help you find exactly what you're looking for.
General Information
Bioinformatics Tools
View All Tools(Main tools directory)
- BLASTP
Protein-Protein BLAST.
- BLASTX
Nucleotide to Protein BLAST.
- BLASTN
Nucleotide-Nucleotide BLAST.
- TBLASTX
Translated Nucleotide vs. Translated Nucleotide BLAST.
- TBLASTN
Protein to Translated Nucleotide BLAST.
- FASTA (Protein-Protein)
Fast protein similarity search.
- FASTA (Nucleotide-Nucleotide)
Fast DNA/RNA similarity search.
- FASTA (Nucleotide-Protein)
Fast DNA/RNA to protein search.
- FASTA (Protein-Nucleotide)
Fast protein to DNA/RNA search.
- Clustal Omega
Perform multiple sequence alignments.
- EMBOSS Cons
Generates a consensus sequence from alignments.
- MAFFT
High-speed multiple sequence alignment.
- Tcoffee
Accurate multiple sequence alignment (MSA) program.
- EMBOSS Cpgplot
Visualize CpG islands in DNA.
- EMBOSS Matcher
Precise pairwise sequence alignment.
- EMBOSS Needle
Optimal global pairwise sequence alignments.
- EMBOSS Stretcher
Fast global pairwise sequence alignment.
- EMBOSS Water
Optimal local pairwise sequence alignments.
- EMBOSS Dotmatcher
Visualize pairwise sequence matches.
- EMBOSS Dotpath
Visualize optimal dot plots.
- EMBOSS Dottup
Visualize exact matches with dot plots.
- EMBOSS Isochore
Analyze genomic G+C content variation.
- EMBOSS Newcpgreport
Detailed CpG island reporting.
- EMBOSS Pepstats
Calculate protein sequence statistics.
- EMBOSS Pepwindow
Visualize protein hydropathy.
- EMBOSS Polydot
Multi-sequence dot plot comparisons.
- SAPS
Comprehensive protein sequence analysis.
- EMBOSS Pepinfo
Basic protein sequence information.
- EMBOSS Backtranambig
Back-translate ambiguous DNA.
- EMBOSS Backtranseq
Back-translate protein to DNA.
- EMBOSS Sixpack
Six-frame translation and ORF analysis.
- EMBOSS Transeq
translating nucleotide sequences into protein sequences.
- EMBOSS Seqret
Sequence retrieval and format conversion.
- Simple Phylogeny
Build phylogenetic trees.
- Infernal Cmscan
RNA structure and family search.
- GGSEARCH2SEQ
Global-global sequence similarity search.
- Lalign
Optimal local pairwise sequence alignment.
- SSEARCH2SEQ
Sensitive local pairwise sequence search.
Documentation Guides
Documentation Home(Overview of all guides)
- Introduction
Overview of Job Dispatcher documentation.
- Citing Our Tools
Guidance on how to cite Job Dispatcher and EMBL-EBI resources.
- BLAST Tools Guides
- BLASTP Guide
Protein-Protein BLAST.
- BLASTX Guide
Nucleotide to Protein BLAST.
- BLASTN Guide
Nucleotide-Nucleotide BLAST.
- TBLASTX Guide
Translated Nucleotide vs. Translated Nucleotide BLAST.
- TBLASTN Guide
Protein to Translated Nucleotide BLAST.
- BLASTP Guide
- FASTA Tools Guides
- FASTA (Protein-Protein) Guide
Fast protein similarity search.
- FASTA (Nucleotide-Nucleotide) Guide
Fast DNA/RNA similarity search.
- FASTA (Nucleotide-Protein) Guide
Fast DNA/RNA to protein search.
- FASTA (Protein-Nucleotide) Guide
Fast protein to DNA/RNA search.
- FASTA (Protein-Protein) Guide
- Clustal Omega Guide
Perform multiple sequence alignments.
- EMBOSS Cons Guide
Generates a consensus sequence from alignments.
- MAFFT Guide
High-speed multiple sequence alignment.
- Tcoffee Guide
Accurate multiple sequence alignment (MSA) program.
- EMBOSS Cpgplot Guide
Visualize CpG islands in DNA.
- EMBOSS Matcher Guide
Precise pairwise sequence alignment.
- EMBOSS Needle Guide
Optimal global pairwise sequence alignments.
- EMBOSS Stretcher Guide
Fast global pairwise sequence alignment.
- EMBOSS Water Guide
Optimal local pairwise sequence alignments.
- EMBOSS Dotmatcher Guide
Visualize pairwise sequence matches.
- EMBOSS Dotpath Guide
Visualize optimal dot plots.
- EMBOSS Dottup Guide
Visualize exact matches with dot plots.
- EMBOSS Isochore Guide
Analyze genomic G+C content variation.
- EMBOSS Newcpgreport Guide
Detailed CpG island reporting.
- EMBOSS Pepstats Guide
Calculate protein sequence statistics.
- EMBOSS Pepwindow Guide
Visualize protein hydropathy.
- EMBOSS Polydot Guide
Multi-sequence dot plot comparisons.
- SAPS Guide
Comprehensive protein sequence analysis.
- EMBOSS Pepinfo Guide
Basic protein sequence information.
- EMBOSS Backtranambig Guide
Back-translate ambiguous DNA.
- EMBOSS Backtranseq Guide
Back-translate protein to DNA.
- EMBOSS Sixpack Guide
Six-frame translation and ORF analysis.
- EMBOSS Transeq Guide
translating nucleotide sequences into protein sequences.
- EMBOSS Seqret Guide
Sequence retrieval and format conversion.
- Simple Phylogeny Guide
Build phylogenetic trees.
- Infernal Cmscan Guide
RNA structure and family search.
- GGSEARCH2SEQ Guide
Global-global sequence similarity search.
- Lalign Guide
Optimal local pairwise sequence alignment.
- SSEARCH2SEQ Guide
Sensitive local pairwise sequence search.
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